1N1B
Crystal Structure of (+)-Bornyl Diphosphate Synthase from Sage
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1n1ba1 | All alpha proteins | alpha/alpha toroid | Terpenoid cyclases/Protein prenyltransferases | Terpenoid cyclase N-terminal domain | (+)-bornyl diphosphate synthase | garden sage (Salvia officinalis ) [TaxId: 38868 ], | SCOPe (2.08) |
A | d1n1ba2 | All alpha proteins | Terpenoid synthases | Terpenoid synthases | Terpenoid cyclase C-terminal domain | (+)-bornyl diphosphate synthase | garden sage (Salvia officinalis ) [TaxId: 38868 ], | SCOPe (2.08) |
B | d1n1bb1 | All alpha proteins | alpha/alpha toroid | Terpenoid cyclases/Protein prenyltransferases | Terpenoid cyclase N-terminal domain | (+)-bornyl diphosphate synthase | garden sage (Salvia officinalis ) [TaxId: 38868 ], | SCOPe (2.08) |
B | d1n1bb2 | All alpha proteins | Terpenoid synthases | Terpenoid synthases | Terpenoid cyclase C-terminal domain | (+)-bornyl diphosphate synthase | garden sage (Salvia officinalis ) [TaxId: 38868 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Terpenoid synthases | 8043991 | 3001615 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Terpenoid cyclases/Protein prenyltransferases | 8043990 | 3001024 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Terpenoid cyclases/Protein prenyltransferases | 8043990 | 3001024 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Terpenoid synthases | 8043991 | 3001615 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Terpene_synth_C | e1n1bA1 | A: alpha bundles | X: Terpenoid synthases (From Topology) | H: Terpenoid synthases (From Topology) | T: Terpenoid synthases | F: Terpene_synth_C | ECOD (1.6) |
A | Terpene_synth | e1n1bA2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: alpha/alpha toroid (From Topology) | T: alpha/alpha toroid | F: Terpene_synth | ECOD (1.6) |
B | Terpene_synth_C | e1n1bB1 | A: alpha bundles | X: Terpenoid synthases (From Topology) | H: Terpenoid synthases (From Topology) | T: Terpenoid synthases | F: Terpene_synth_C | ECOD (1.6) |
B | Terpene_synth | e1n1bB2 | A: alpha superhelices | X: Repetitive alpha hairpins | H: alpha/alpha toroid (From Topology) | T: alpha/alpha toroid | F: Terpene_synth | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.50.10.130 | Mainly Alpha | Alpha/alpha barrel | Glycosyltransferase | Terpene synthase, N-terminal domain | CATH (4.3.0) |
A | 1.10.600.10 | Mainly Alpha | Orthogonal Bundle | Farnesyl Diphosphate Synthase | Farnesyl Diphosphate Synthase | CATH (4.3.0) |
B | 1.50.10.130 | Mainly Alpha | Alpha/alpha barrel | Glycosyltransferase | Terpene synthase, N-terminal domain | CATH (4.3.0) |
B | 1.10.600.10 | Mainly Alpha | Orthogonal Bundle | Farnesyl Diphosphate Synthase | Farnesyl Diphosphate Synthase | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF03936 | Terpene synthase family, metal binding domain (Terpene_synth_C) | Terpene synthase family, metal binding domain | It has been suggested that this gene family be designated tps (for terpene synthase) [1]. It has been split into six subgroups on the basis of phylogeny, called tpsa-tpsf. tpsa includes vetispiridiene synthase Swiss:Q39979, 5-epi- aristolochene synt ... | Domain | |
PF01397 | Terpene synthase, N-terminal domain (Terpene_synth) | Terpene synthase, N-terminal domain | - | Repeat |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
(+)-bornyl diphosphate synthase | |
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InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR005630 | Terpene synthase, metal-binding domain | Domain | |
IPR008949 | Isoprenoid synthase domain superfamily | Homologous Superfamily | |
IPR036965 | Terpene synthase, N-terminal domain superfamily | Homologous Superfamily | |
IPR044814 | Terpene cyclases, class 1, plant | Family | |
IPR001906 | Terpene synthase, N-terminal domain | Domain | |
IPR008930 | Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid | Homologous Superfamily |