2R9K
Crystal Structure of Misteltoe Lectin I in Complex with Phloretamide
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | d2r9kb1 | All beta proteins | beta-Trefoil | Ricin B-like lectins | Ricin B-like | Plant cytotoxin B-chain (lectin) | European mistletoe (Viscum album ) [TaxId: 3972 ], | SCOPe (2.08) |
A | d2r9ka_ | Alpha and beta proteins (a+b) | Ribosome inactivating proteins (RIP) | Ribosome inactivating proteins (RIP) | Plant cytotoxins | automated matches | European mistletoe (Viscum album ) [TaxId: 3972 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | Ricin B-like lectins | 8036805 | 3000678 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ricin B-like lectins | 8036804 | 3000678 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Ribosome inactivating proteins (RIP) | 8032658 | 3001164 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | Ricin_B_lectin | e2r9kB1 | A: beta duplicates or obligate multimers | X: beta-Trefoil (From Topology) | H: beta-Trefoil (From Topology) | T: beta-Trefoil | F: Ricin_B_lectin | ECOD (1.6) |
A | RIP | e2r9kA1 | A: a+b two layers | X: RIP/Polo-box domain | H: Ribosome inactivating proteins (RIP) (From Topology) | T: Ribosome inactivating proteins (RIP) | F: RIP | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 2.80.10.50 | Mainly Beta | Trefoil | Trefoil (Acidic Fibroblast Growth Factor, subunit A) | CATH (4.3.0) | |
A | 3.40.420.10 | Alpha Beta | 3-Layer(aba) Sandwich | Ricin (A subunit) | domain 1 | CATH (4.3.0) |
A | 4.10.470.10 | Few Secondary Structures | Irregular | Ricin (A Subunit), domain 2 | Ricin (A Subunit), domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00652 | Ricin-type beta-trefoil lectin domain (Ricin_B_lectin) | Ricin-type beta-trefoil lectin domain | - | Domain | |
PF00161 | Ribosome inactivating protein (RIP) | Ribosome inactivating protein | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR036041 | Ribosome-inactivating protein superfamily | Homologous Superfamily | |
IPR016139 | Ribosome-inactivating protein, subdomain 2 | Homologous Superfamily | |
IPR017989 | Ribosome-inactivating protein type 1/2 | Family | |
IPR035992 | Ricin B-like lectins | Homologous Superfamily | |
IPR016138 | Ribosome-inactivating protein, subdomain 1 | Homologous Superfamily | |
IPR001574 | Ribosome-inactivating protein | Family | |
IPR000772 | Ricin B, lectin domain | Domain | |
IPR036041 | Ribosome-inactivating protein superfamily | Homologous Superfamily | |
IPR016139 | Ribosome-inactivating protein, subdomain 2 | Homologous Superfamily | |
IPR017989 | Ribosome-inactivating protein type 1/2 | Family | |
IPR035992 | Ricin B-like lectins | Homologous Superfamily | |
IPR016138 | Ribosome-inactivating protein, subdomain 1 | Homologous Superfamily | |
IPR001574 | Ribosome-inactivating protein | Family | |
IPR000772 | Ricin B, lectin domain | Domain |