4LCZ

Crystal structure of a multilayer-packed major light-harvesting complex

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4lcza_	Membrane and cell surface proteins and peptides	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	automated matches	(Spinacia oleracea ) [TaxId: 3562 ],	SCOPe (2.08)
B	d4lczb_	Membrane and cell surface proteins and peptides	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	automated matches	(Spinacia oleracea ) [TaxId: 3562 ],	SCOPe (2.08)
C	d4lczc_	Membrane and cell surface proteins and peptides	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	Chlorophyll a-b binding protein	automated matches	(Spinacia oleracea ) [TaxId: 3562 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Chlorophyll a-b binding protein	8041052	3000343	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Chlorophyll a-b binding protein	8041052	3000343	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Chlorophyll a-b binding protein	8041052	3000343	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Chloroa_b-bind	e4lczA1	A: extended segments	X: Chlorophyll a-b binding protein (From Topology)	H: Chlorophyll a-b binding protein (From Topology)	T: Chlorophyll a-b binding protein	F: Chloroa_b-bind	ECOD (1.6)
B	Chloroa_b-bind	e4lczB1	A: extended segments	X: Chlorophyll a-b binding protein (From Topology)	H: Chlorophyll a-b binding protein (From Topology)	T: Chlorophyll a-b binding protein	F: Chloroa_b-bind	ECOD (1.6)
C	Chloroa_b-bind	e4lczC1	A: extended segments	X: Chlorophyll a-b binding protein (From Topology)	H: Chlorophyll a-b binding protein (From Topology)	T: Chlorophyll a-b binding protein	F: Chloroa_b-bind	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.3460.10	Mainly Alpha	Orthogonal Bundle	Chlorophyll a-b binding protein	Chlorophyll a/b binding protein domain	CATH (4.3.0)
B	1.10.3460.10	Mainly Alpha	Orthogonal Bundle	Chlorophyll a-b binding protein	Chlorophyll a/b binding protein domain	CATH (4.3.0)
C	1.10.3460.10	Mainly Alpha	Orthogonal Bundle	Chlorophyll a-b binding protein	Chlorophyll a/b binding protein domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C	PF00504	Chlorophyll A-B binding protein (Chloroa_b-bind)	Chlorophyll A-B binding protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	Major chlorophyll a/b binding protein LHCb1.3	chlorophyll binding binding organic cyclic compound binding tetrapyrrole binding cation binding ion binding metal ion binding small molecule binding	response to light stimulus response to stimulus response to radiation response to abiotic stimulus photosynthesis, light harvesting in photosystem I photosynthesis photosynthesis, light reaction photosynthesis, light harvesting metabolic process cellular process generation of precursor metabolites and energy	protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex intracellular membraneless organelle intracellular organelle cellular anatomical structure organelle membraneless organelle photosynthetic membrane thylakoid membrane-bounded organelle protein-containing complex photosystem intracellular anatomical structure photosystem II membrane membrane protein complex intracellular membraneless organelle intracellular organelle cellular anatomical structure organelle membraneless organelle photosynthetic membrane thylakoid membrane-bounded organelle plastid intracellular membrane-bounded organelle plastoglobule plastid stroma chloroplast stroma cytoplasm chloroplast chloroplast thylakoid membrane plastid membrane organelle outer membrane plastid thylakoid membrane plastid thylakoid organelle envelope bounding membrane of organelle plastid envelope thylakoid membrane chloroplast thylakoid outer membrane organelle membrane photosystem I chloroplast envelope

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR001344	Chlorophyll A-B binding protein, plant and chromista	Family
A, B, C	IPR022796	Chlorophyll A-B binding protein	Family

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B, C	MemProtMD	Annotated as membrane protein by MemProtMD

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.