2KEM
Extended structure of citidine deaminase domain of APOBEC3G
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D 1H-15N HSQC | 0.3 mM [U-100% 15N] apobec3g-1 | 90% H2O/10% D2O | 0 | 7.0 | ambient | 298 | |
2 | 3D HNCA | 0.3 mM [U-13C; U-15N; U-2H] apobec3g-2 | 90% H2O/10% D2O | 0 | 7.0 | ambient | 298 | |
3 | 3D HNCACB | 0.3 mM [U-13C; U-15N; U-2H] apobec3g-2 | 90% H2O/10% D2O | 0 | 7.0 | ambient | 298 | |
4 | 3D 1H-15N NOESY | 0.3 mM [U-15N; U-50% 2H] apobec3g-3 | 90% H2O/10% D2O | 0 | 7.0 | ambient | 298 | |
5 | 3D 1H-15N NOESY | 0.3 mM [U-100% 15N] apobec3g-1 | 90% H2O/10% D2O | 0 | 7.0 | ambient | 298 | |
6 | 3D 1H-13C NOESY | 0.3 mM [U-100% 13C] apobec3g-4 | 100% D2O | 0 | 7.0 | ambient | 298 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | AVANCE | 700 |
2 | Varian | INOVA | 800 |
3 | Bruker | AVANCE | 800 |
4 | Bruker | AVANCE | 900 |
5 | Varian | INOVA | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | cns | CNS |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest energy) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | refinement | CNS | Brunger A. T. et.al. |