3D5O
Structural recognition and functional activation of FcrR by innate pentraxins
External Resource: Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Concanavalin A-like lectins/glucanases | 8041430 | 3000120 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Concanavalin A-like lectins/glucanases | 8041430 | 3000120 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Concanavalin A-like lectins/glucanases | 8041430 | 3000120 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Concanavalin A-like lectins/glucanases | 8041430 | 3000120 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Concanavalin A-like lectins/glucanases | 8041430 | 3000120 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054817 | 3000071 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8055584 | 3000071 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Pentaxin | e3d5oA1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: Pentaxin | ECOD (1.6) |
E | Pentaxin | e3d5oE1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: Pentaxin | ECOD (1.6) |
B | Pentaxin | e3d5oB1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: Pentaxin | ECOD (1.6) |
C | Pentaxin | e3d5oC1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: Pentaxin | ECOD (1.6) |
D | Pentaxin | e3d5oD1 | A: beta sandwiches | X: jelly-roll | H: Concanavalin A-like | T: Concanavalin A-like lectins/glucanases | F: Pentaxin | ECOD (1.6) |
F | I-set_4 | e3d5oF2 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: I-set_4 | ECOD (1.6) |
F | Ig_2_1 | e3d5oF1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: Ig_2_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.120.200 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
E | 2.60.120.200 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
B | 2.60.120.200 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
C | 2.60.120.200 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
D | 2.60.120.200 | Mainly Beta | Sandwich | Jelly Rolls | CATH (4.3.0) | |
F | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
Pentraxin (APCS serum amyloid P component, SAP) | APCS (Pr20-223) | Homo sapiens (human) | APCS*01 | R-LIKE-DOMAIN APCS (Pr20-223) | RPI | (APCS (Pr20-223)) | IMGT (202447-0) | |
FCGR2A | 2C-LIKE | Homo sapiens (human) | FCGR2A*01 | C-LIKE-DOMAIN C-LIKE | RPI | 2C-LIKE | IMGT (202447-0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00354 | Pentaxin family (Pentaxin) | Pentaxin family | Pentaxins are also known as pentraxins. | Domain | |
PF13895 | Immunoglobulin domain (Ig_2) | Immunoglobulin domain | This domain contains immunoglobulin-like domains. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001759 | Pentraxin-related | Family | |
IPR030476 | Pentaxin, conserved site | Conserved Site | |
IPR013320 | Concanavalin A-like lectin/glucanase domain superfamily | Homologous Superfamily | |
IPR051005 | Pentraxin domain-containing protein | Family | |
IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily | |
IPR003598 | Immunoglobulin subtype 2 | Domain | |
IPR050488 | Immunoglobulin Fc region receptor | Family | |
IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
IPR003599 | Immunoglobulin domain subtype | Domain | |
IPR007110 | Immunoglobulin-like domain | Domain |