6Y0V

Fucosylated bicyclic peptide bp71 bound to the fucose binding lectin LecB PA-IIL from Pseudomonas aeruginosa at 1.7 Angstrom resolution

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Calcium-mediated lectin	8042940	3001391	SCOP2B (2022-06-29)
D [auth C]	SCOP2B Superfamily	Calcium-mediated lectin	8042940	3001391	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	Calcium-mediated lectin	8042940	3001391	SCOP2B (2022-06-29)
F [auth D]	SCOP2B Superfamily	Calcium-mediated lectin	8042940	3001391	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PA-IIL	e6y0vA1	A: beta sandwiches	X: jelly-roll	H: Calcium-mediated lectin (From Topology)	T: Calcium-mediated lectin	F: PA-IIL	ECOD (1.6)
D [auth C]	PA-IIL	e6y0vC1	A: beta sandwiches	X: jelly-roll	H: Calcium-mediated lectin (From Topology)	T: Calcium-mediated lectin	F: PA-IIL	ECOD (1.6)
C [auth B]	PA-IIL	e6y0vB1	A: beta sandwiches	X: jelly-roll	H: Calcium-mediated lectin (From Topology)	T: Calcium-mediated lectin	F: PA-IIL	ECOD (1.6)
F [auth D]	PA-IIL	e6y0vD1	A: beta sandwiches	X: jelly-roll	H: Calcium-mediated lectin (From Topology)	T: Calcium-mediated lectin	F: PA-IIL	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C [auth B], D [auth C], F [auth D]	PF07472	Fucose-binding lectin II (PA-IIL) (PA-IIL)	Fucose-binding lectin II (PA-IIL)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C [auth B], D [auth C], F [auth D]	Fucose-binding lectin	binding carbohydrate binding cation binding ion binding metal ion binding small molecule binding	cell aggregation biofilm formation biological process involved in intraspecies interaction between organisms single-species biofilm formation cellular process aggregation of unicellular organisms	-
B [auth E], E [auth G], G [auth H]	bp71	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C [auth B], D [auth C], F [auth D]	IPR036684	Calcium-mediated lectin superfamily	Homologous Superfamily
A, C [auth B], D [auth C], F [auth D]	IPR010907	Calcium-mediated lectin	Domain
A, C [auth B], D [auth C], F [auth D]	IPR016927	Lectin, sugar-binding	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B [auth E], E [auth G], G [auth H]	DLY
B [auth E], E [auth G], G [auth H]	NH2	RESID: AA0081 , AA0083 , AA0084 , AA0086 , AA0087 , AA0088 , AA0090 , AA0091 , AA0092 , AA0093 , AA0095 , AA0096 , AA0097 , AA0098 , AA0099 , AA0100 PSI-MOD : L-alanine amide MOD:00090 , L-asparagine amide MOD:00092 , L-aspartic acid 1-amide MOD:00093 , L-glutamine amide MOD:00095 , L-glutamic acid 1-amide MOD:00096 , glycine amide MOD:00097 , L-isoleucine amide MOD:00099 , L-leucine amide MOD:00100 , L-lysine amide MOD:00101 , L-methionine amide MOD:00102 , L-proline amide MOD:00104 , L-serine amide MOD:00105 , L-threonine amide MOD:00106 , L-tryptophan amide MOD:00107 , L-tyrosine amide MOD:00108 , L-valine amide MOD:00109
B [auth E], E [auth G], G [auth H]	O65	RESID: AA0081 , AA0083 , AA0084 , AA0086 , AA0087 , AA0088 , AA0090 , AA0091 , AA0092 , AA0093 , AA0095 , AA0096 , AA0097 , AA0098 , AA0099 , AA0100

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.