Ligand validation:8VD0

NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG is a Ligand Of Interest in 8VD0 designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
8VD0_NAG_F_201	18%	86%	0.277	0.862	0.26	0.45	-	-	0	0	100%	0.9333
8VD0_NAG_A_201	6%	80%	0.391	0.825	0.35	0.49	-	-	0	0	100%	0.9333
8VD0_NAG_H_301	6%	89%	0.273	0.697	0.28	0.37	-	-	0	0	100%	0.9333
8VD0_NAG_A_202	5%	90%	0.258	0.653	0.25	0.35	-	-	0	0	100%	0.9333
8VD0_NAG_F_202	4%	89%	0.477	0.87	0.25	0.4	-	-	0	0	93%	0.9333
4Z7U_NAG_A_1000	45%	61%	0.209	0.941	0.32	1.14	-	1	0	0	100%	0.9333
6DFX_NAG_D_201	40%	3%	0.116	0.824	2.69	3.6	5	8	0	0	100%	0.9333
4Z7V_NAG_C_1000	36%	74%	0.184	0.876	0.29	0.72	-	1	0	0	100%	0.9333
5UJT_NAG_A_204	32%	64%	0.153	0.824	0.56	0.8	-	1	0	0	100%	0.9333
8VDD_NAG_A_201	28%	84%	0.199	0.85	0.27	0.48	-	-	0	0	100%	0.9333
3H0C_NAG_A_794	100%	56%	0.021	0.995	0.61	1.08	-	1	0	0	100%	0.9333
5LDS_NAG_B_1007	100%	67%	0.022	0.995	0.48	0.79	-	-	0	0	100%	0.9333
5O5D_NAG_A_601	100%	65%	0.022	0.994	0.32	0.99	-	1	0	0	100%	0.9333
6MUG_NAG_G_629	100%	76%	0.022	0.994	0.35	0.58	-	-	0	0	100%	0.9333
3GXM_NAG_A_498	100%	45%	0.026	0.992	0.75	1.34	-	2	0	0	100%	0.9333

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.