2Q60

Crystal structure of the ligand binding domain of polyandrocarpa misakiensis rxr in tetramer in absence of ligand

PDB DOI: https://doi.org/10.2210/pdb2Q60/pdb

Classification: TRANSCRIPTION
Organism(s): Polyandrocarpa misakiensis
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2007-06-04 Released: 2008-05-27
Deposition Author(s): Borel, F., De Groot, A., Juillan-Binard, C., De Rosny, E., Laudet, V., Pebay-Peyroula, E., Fontecilla-Camps, J.-C., Ferrer, J.-L.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free: 0.325
R-Value Work: 0.269
R-Value Observed: 0.272

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of the ligand-binding domain of the retinoid X receptor from the ascidian polyandrocarpa misakiensis.

Borel, F., de Groot, A., Juillan-Binard, C., de Rosny, E., Laudet, V., Pebay-Peyroula, E., Fontecilla-Camps, J.C., Ferrer, J.L.

(2008) Proteins 74: 538-542

PubMed: 19004016 Search on PubMed
DOI: https://doi.org/10.1002/prot.22294
Primary Citation of Related Structures:
2Q60

Organizational Affiliation

Laboratoire de Cristallographie et Cristallogenèse des Protéines, Institut de Biologie Structurale Jean-Pierre Ebel, 41 rue Jules Horowitz, F-38027 Grenoble, France. [email protected]

Macromolecule Content

Total Structure Weight: 116.27 kDa
Atom Count: 6,256
Modelled Residue Count: 796
Deposited Residue Count: 1,032
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Retinoid X receptor	A, B, C, D	258	Polyandrocarpa misakiensis	Mutation(s): 2 Gene Names: PmRXR
UniProt
Find proteins for Q9UAF1 (Polyandrocarpa misakiensis) Explore Q9UAF1 Go to UniProtKB: Q9UAF1
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q9UAF1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.90 Å
R-Value Free: 0.325
R-Value Work: 0.269
R-Value Observed: 0.272
Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 82.26	α = 90
b = 96.12	β = 90
c = 151.72	γ = 90

Software Package:

Software Name	Purpose
XSCALE	data scaling
MOLREP	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
XDS	data scaling
XDS	data reduction

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2008-05-27

Deposition Author(s):

Fontecilla-Camps, J.-C.

Ferrer, J.-L.

Revision History (Full details and data files)

Version 1.0: 2008-05-27
Type: Initial release
Version 1.1: 2011-07-13
Changes: Advisory, Refinement description, Version format compliance
Version 1.2: 2021-10-20
Changes: Database references
Version 1.3: 2023-08-30
Changes: Data collection, Refinement description