Download MendeleyCrystal structure of Peptidyl-tRNA hydrolase from Pseudomonas aeruginosa with Adipic acid at 2.4 Angstrom resolution
Kumar, A., Singh, A., Singh, N., Sinha, M., Sharma, S., Arora, A., Singh, T.P.To be published.
4DHW
Crystal structure of Peptidyl-tRNA hydrolase from Pseudomonas aeruginosa with Adipic acid at 2.4 Angstrom resolution
- PDB DOI: https://doi.org/10.2210/pdb4DHW/pdb
- Classification: HYDROLASE
- Organism(s): Pseudomonas aeruginosa PAO1
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2012-01-30 Released: 2012-02-29
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.43 Å
- R-Value Free: 0.206
- R-Value Work: 0.195
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Peptidyl-tRNA hydrolase | 194 | Pseudomonas aeruginosa PAO1 | Mutation(s): 0 Gene Names: PA4672, pth EC: 3.1.1.29 |  | |
UniProt | |||||
Find proteins for Q9HVC3 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)) Explore Q9HVC3 Go to UniProtKB: Q9HVC3 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9HVC3 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 0L1 Query on 0L1 | C [auth A], D [auth B] | hexanedioic acid C6 H10 O4 WNLRTRBMVRJNCN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.43 Å
- R-Value Free: 0.206
- R-Value Work: 0.195
- Space Group: P 61
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 64.594 | α = 90 |
| b = 64.594 | β = 90 |
| c = 156.245 | γ = 120 |
| Software Name | Purpose |
|---|---|
| MAR345dtb | data collection |
| AMoRE | phasing |
| CNS | refinement |
| DENZO | data reduction |
| SCALA | data scaling |
Entry History
Deposition Data
- Released Date: 2012-02-29 Deposition Author(s): Kumar, A., Singh, A., Singh, N., Sinha, M., Sharma, S., Arora, A., Singh, T.P.
Revision History (Full details and data files)
- Version 1.0: 2012-02-29
Type: Initial release - Version 1.1: 2023-11-08
Changes: Data collection, Database references, Derived calculations, Refinement description
