Download MendeleyX-ray crystal structure of a serine hydroxymethyl transferase in apo form from Burkholderia cenocepacia
Fairman, J.W., Jensen, M.M., Sullivan, A.H., Abendroth, J., Edwards, T.E., Lorimer, D.To be published.
4MSO
X-ray crystal structure of a serine hydroxymethyl transferase in apo form from Burkholderia cenocepacia
- PDB DOI: https://doi.org/10.2210/pdb4MSO/pdb
- Classification: TRANSFERASE
- Organism(s): Burkholderia cenocepacia J2315
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2013-09-18 Released: 2013-12-11
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.182
- R-Value Work: 0.146
- R-Value Observed: 0.148
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Serine hydroxymethyltransferase | 423 | Burkholderia cenocepacia J2315 | Mutation(s): 0 Gene Names: glyA, glyA1, BceJ2315_31420, BCAL3197 EC: 2.1.2.1 |  | |
UniProt | |||||
Find proteins for B4ECY9 (Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / CF5610)) Explore B4ECY9 Go to UniProtKB: B4ECY9 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B4ECY9 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PO4 Query on PO4 | C [auth A], D [auth A], F [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| EDO Query on EDO | E [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.40 Å
- R-Value Free: 0.182
- R-Value Work: 0.146
- R-Value Observed: 0.148
- Space Group: P 21 21 21
- Diffraction Data: https://doi.org/10.18430/M34MSO
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 55.28 | α = 90 |
| b = 72.58 | β = 90 |
| c = 182.12 | γ = 90 |
| Software Name | Purpose |
|---|---|
| XSCALE | data scaling |
| PHASER | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
Entry History
Deposition Data
- Released Date: 2013-12-11 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Revision History (Full details and data files)
- Version 1.0: 2013-12-11
Type: Initial release - Version 1.1: 2023-09-20
Changes: Data collection, Database references, Derived calculations, Refinement description
