Crystal structure of a dimeric yak lactoperoxidase at 2.59 A resolution.
Viswanathan, V., Pandey, S.N., Sharma, P., Rani, C., Ahmad, N., Sharma, S., Singh, T.P.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Lactoperoxidase | 595 | Bos mutus | Mutation(s): 0  EC: 1.11.1.7 | ||
UniProt | |||||
Find proteins for L8ICE9 (Bos mutus) Explore L8ICE9  Go to UniProtKB:  L8ICE9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | L8ICE9 | ||||
Glycosylation | |||||
Glycosylation Sites: 4 | |||||
Sequence AnnotationsExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
HEM (Subject of Investigation/LOI) Query on HEM | E [auth A], O [auth B] | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L | |||
NAG (Subject of Investigation/LOI) Query on NAG | C [auth A] D [auth A] I [auth A] J [auth A] K [auth B] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N | |||
CA (Subject of Investigation/LOI) Query on CA | G [auth A], Q [auth B] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N | |||
CL (Subject of Investigation/LOI) Query on CL | H [auth A], R [auth B] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M | |||
PEO (Subject of Investigation/LOI) Query on PEO | F [auth A], P [auth B] | HYDROGEN PEROXIDE H2 O2 MHAJPDPJQMAIIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 81.295 | α = 90 |
b = 96.732 | β = 90.304 |
c = 83.931 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
XDS | data reduction |
XSCALE | data scaling |
MOLREP | phasing |
Coot | model building |
Funding Organization | Location | Grant Number |
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Department of Science & Technology (DST, India) | India | PDF/2018/000008 |